PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016497989.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family C2H2
Protein Properties Length: 360aa    MW: 41211.9 Da    PI: 6.549
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016497989.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.13.2e-05199218120
                     EEETTTTEEESSHHHHHHHH CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                     ++Cp C k+F+r  n++ H+
  XP_016497989.1 199 FSCPVCFKTFNRYNNMQMHM 218
                     89*****************9 PP

2zf-C2H214.50.0001283305123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     + C +Cgk F  + + ++H +++
  XP_016497989.1 283 FMCRKCGKAFAVRGDWRTHEKNC 305
                     89*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.605.2E-6199218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.64199226IPR007087Zinc finger, C2H2
SMARTSM003550.38199221IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280201221IPR007087Zinc finger, C2H2
SuperFamilySSF576671.65E-6265303No hitNo description
Gene3DG3DSA:3.30.160.601.0E-5279303IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808283303IPR007087Zinc finger, C2H2
SMARTSM0035549283303IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MTDPNYQPNF YNSQQQYWLK FNPNSTHHFL SSNSKPPPNF LHNFYSTNYQ SSSHHPPTPP  60
SPPLKEALPL LSLSPIKHDE VVVQEPVACC TSTMDVDINK ARDDRSTKND AAARENDEEE  120
EDETDVTVAL HIGLPNPSAA DLASILSSNR NEEEEDEETY HDLDNDVTNM NMNMINTRLN  180
KGQYWIPTPS QILIGPTQFS CPVCFKTFNR YNNMQMHMWG HGSQYRKGPE SLRGTQPTGM  240
LRLPCYCCTP GCRNNIDHPR AKPLKDFRTL QTHYKRKHGI KPFMCRKCGK AFAVRGDWRT  300
HEKNCGKLWY CICGSDFKHK RSLKDHIKAF GQGHGAYGID NFEEEEDPAS EVEQDNESIL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009593388.10.0PREDICTED: protein TRANSPARENT TESTA 1
RefseqXP_016497989.10.0PREDICTED: zinc finger protein WIP2-like
SwissprotQ9SVY11e-141ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLF6HL471e-168F6HL47_VITVI; Putative uncharacterized protein
STRINGVIT_08s0007g08070.t011e-167(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA46224133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-135C2H2 family protein